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    RNI-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824049, updated on 18-Sep-2024

    Summary

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    Official Full Name
    RNI-like superfamily protein
    Primary source
    TAIR:AT3G48880
    Locus tag
    AT3G48880
    See related
    Araport:AT3G48880
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (18126788..18129251)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene phosphate transporter 3;2 Neighboring gene coiled-coil protein Neighboring gene Clp ATPase Neighboring gene membrane-associated progesterone binding protein 3 Neighboring gene single-stranded DNA endonuclease family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SCF(SNIPER4) controls the turnover of two redundant TRAF proteins in plant immunity. Huang J, et al. Plant J, 2018 Aug. PMID 29770510
    2. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    3. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    5. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001339387.1
    NM_114747.5
    NM_180340.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SCF ubiquitin ligase complex binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to Gram-negative bacterium IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    RNI-like superfamily protein
    NP_190457.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_850671.1
    • RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G11580.1); Has 401 Blast hits to 392 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 0; Plants - 349; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      18126788..18129251
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180340.3 → NP_850671.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850671.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8M6, Q9M2Z5
      UniProtKB/TrEMBL
      A0A178VLS3, A0A5S9XJ76
      Conserved Domains (3) summary
      cd09293
      Location:91 → 250
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:126 → 151
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:13 → 58
      F-box-like

    2. NM_114747.5 → NP_190457.1  RNI-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190457.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8M6, Q9M2Z5
      UniProtKB/TrEMBL
      A0A178VLS3, A0A5S9XJ76
      Conserved Domains (3) summary
      cd09293
      Location:91 → 250
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:126 → 151
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:13 → 58
      F-box-like

    3. NM_001339387.1 → NP_001327846.1  RNI-like superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L8M6, Q9M2Z5
      UniProtKB/TrEMBL
      A0A178VLS3, A0A5S9XJ76
      Conserved Domains (3) summary
      cd09293
      Location:91 → 250
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:126 → 151
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam12937
      Location:13 → 58
      F-box-like
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M2Z5.1

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