U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RS2Z32 RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824518, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RS2Z32
    Official Full Name
    RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
    Primary source
    TAIR:AT3G53500
    Locus tag
    AT3G53500
    See related
    Araport:AT3G53500
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    arginine/serine-rich zinc knuckle-containing protein 32; At-RS2Z; RSZ32
    Summary
    Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RS2Z32 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Sequence:
    Chromosome: 3; NC_003074.8 (19834240..19837088, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene pleiotropic drug resistance 9 Neighboring gene valine-tRNA ligase Neighboring gene ABC-2 type transporter family protein Neighboring gene UDP-glucuronic acid decarboxylase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Network of interactions of a novel plant-specific Arg/Ser-rich protein, atRSZ33, with atSC35-like splicing factors. Lopato S, et al. J Biol Chem, 2002 Oct 18. PMID 12176998
    2. Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism. de la Fuente van Bentem S, et al. Nucleic Acids Res, 2006. PMID 16807317, Free PMC Article
    3. Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. Bach-Pages M, et al. Biomolecules, 2020 Apr 24. PMID 32344669, Free PMC Article
    4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
    5. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001339619.1
    NM_115210.6
    NM_180684.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within RNA splicing NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within mRNA splicing, via spliceosome TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein
    NP_190918.3
    • RSZ32; FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: mitochondrion; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 30335 Blast hits to 26620 proteins in 660 species: Archae - 6; Bacteria - 352; Metazoa - 8518; Fungi - 1445; Plants - 2334; Viruses - 16371; Other Eukaryotes - 1309 (source: NCBI BLink).
    NP_851015.1
    • RSZ32; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA splicing; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, CCHC retroviral-type (InterPro:IPR013084); BEST Arabidopsis thaliana protein match is: arginine/serine-rich zinc knuckle-containing protein 33 (TAIR:AT2G37340.1); Has 25826 Blast hits to 22471 proteins in 477 species: Archae - 0; Bacteria - 10; Metazoa - 6096; Fungi - 978; Plants - 1426; Viruses - 16372; Other Eukaryotes - 944 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      19834240..19837088 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115210.6 → NP_190918.3  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_190918.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LPN6, Q9FYB7
      UniProtKB/TrEMBL
      A0A178V7M8, A0A5S9XKG9
      Conserved Domains (2) summary
      PTZ00368
      Location:86 → 142
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cl17169
      Location:12 → 81
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. NM_001339619.1 → NP_001326575.1  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7R7, A0A5S9XKG9
      Conserved Domains (2) summary
      PTZ00368
      Location:45 → 101
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cl17169
      Location:1 → 40
      RRM_SF; RNA recognition motif (RRM) superfamily

    3. NM_180684.4 → NP_851015.1  RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_851015.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178V7R7, A0A5S9XKG9
      Conserved Domains (2) summary
      PTZ00368
      Location:45 → 101
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cl17169
      Location:1 → 40
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYB7.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.