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    DUF641 family protein (DUF641) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825239, updated on 18-Sep-2024

    Summary

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    Official Full Name
    DUF641 family protein (DUF641)
    Primary source
    TAIR:AT3G60680
    Locus tag
    AT3G60680
    See related
    Araport:AT3G60680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (22429960..22432106)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene spindle/kinetochore-associated-like protein Neighboring gene PLATZ transcription factor family protein Neighboring gene SAUR-like auxin-responsive protein family Neighboring gene hypothetical protein (DUF1163)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis. Narsai R, et al. Plant Physiol, 2011 Nov. PMID 21908688, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_115932.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative gravitropism IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to red or far red light IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoskeleton HDA PubMed 
    located_in peroxisome HDA PubMed 

    General protein information

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    Preferred Names
    DUF641 family protein (DUF641)
    NP_191627.1
    • Plant protein of unknown function (DUF641); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF641, plant (InterPro:IPR006943); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF641) (TAIR:AT2G45260.1); Has 309 Blast hits to 304 proteins in 28 species: Archae - 0; Bacteria - 6; Metazoa - 7; Fungi - 2; Plants - 284; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22429960..22432106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115932.4 → NP_191627.1  DUF641 family protein (DUF641) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191627.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VPF9, A0A384KXY7, A0A7G2EZE7, Q9LZZ5
      Conserved Domains (1) summary
      pfam04859
      Location:114 → 243
      DUF641; Plant protein of unknown function (DUF641)
    Nucleotide Protein
    Heading Accession and Version

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