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    Auxin efflux carrier family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830729, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Auxin efflux carrier family protein
    Primary source
    TAIR:AT5G01990
    Locus tag
    AT5G01990
    See related
    Araport:AT5G01990
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PILS6; PIN-LIKES 6; T7H20.40; T7H20_40
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    9
    Sequence:
    Chromosome: 5; NC_003076.8 (377231..379911, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene RING/U-box superfamily protein Neighboring gene heat-inducible transcription repressor Neighboring gene RING/U-box superfamily protein Neighboring gene uncharacterized protein Neighboring gene RHO guanyl-nucleotide exchange factor 7 Neighboring gene E3 ubiquitin-protein ligase RLIM-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. PILS6 is a temperature-sensitive regulator of nuclear auxin input and organ growth in Arabidopsis thaliana. Feraru E, et al. Proc Natl Acad Sci U S A, 2019 Feb 26. PMID 30755525, Free PMC Article
    2. A novel putative auxin carrier family regulates intracellular auxin homeostasis in plants. Barbez E, et al. Nature, 2012 Apr 15. PMID 22504182
    3. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
    4. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_120277.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to cytosol auxin transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Auxin efflux carrier family protein
    NP_195819.1
    • Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT1G71090.1); Has 514 Blast hits to 486 proteins in 113 species: Archae - 2; Bacteria - 6; Metazoa - 0; Fungi - 225; Plants - 217; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      377231..379911 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120277.3 → NP_195819.1  Auxin efflux carrier family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_195819.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LZN2
      UniProtKB/TrEMBL
      A0A178UER8, A0A5S9Y0W2
      Conserved Domains (1) summary
      pfam03547
      Location:30 → 423
      Mem_trans; Membrane transport protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LZN2.1

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