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    GRP16 glycine-rich protein 16 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830647, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GRP16
    Official Full Name
    glycine-rich protein 16
    Primary source
    TAIR:AT5G07540
    Locus tag
    AT5G07540
    See related
    Araport:AT5G07540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATGRP-6; ATGRP16; glycine-rich protein 16; T2I1.250; T2I1_250
    Summary
    encodes a glycine-rich protein that is expressed only in flowers during a specific developmental stage (flower stages 11 and 12).
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    Genomic context

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    See GRP16 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (2385900..2387249, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene glycine-rich protein 18 Neighboring gene glycine rich protein 17 Neighboring gene uncharacterized protein Neighboring gene glycine-rich protein 19 Neighboring gene glycine-rich protein 20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene families from the Arabidopsis thaliana pollen coat proteome. Mayfield JA, et al. Science, 2001 Jun 29. PMID 11431566
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_120836.5
    NM_180457.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables lipid binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within sexual reproduction IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in monolayer-surrounded lipid storage body IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glycine-rich protein 16
    NP_196371.1
    • glycine-rich protein 16 (GRP16); CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine rich protein 17 (TAIR:AT5G07530.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850788.2
    • glycine-rich protein 16 (GRP16); CONTAINS InterPro DOMAIN/s: Oleosin (InterPro:IPR000136); BEST Arabidopsis thaliana protein match is: glycine rich protein 17 (TAIR:AT5G07530.2); Has 20559 Blast hits to 7779 proteins in 873 species: Archae - 42; Bacteria - 6689; Metazoa - 5583; Fungi - 1212; Plants - 3294; Viruses - 454; Other Eukaryotes - 3285 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      2385900..2387249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_120836.5 → NP_196371.1  glycine-rich protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196371.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q43308, Q94FP7, Q94FP8, Q94FQ5, Q94FR1, Q9LY08
      UniProtKB/TrEMBL
      A0A654FZL6
      Conserved Domains (1) summary
      pfam01277
      Location:24 → 93
      Oleosin

    2. NM_180457.3 → NP_850788.2  glycine-rich protein 16 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850788.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K823
      Conserved Domains (1) summary
      pfam01277
      Location:24 → 93
      Oleosin; Oleosin
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LY08.1

    Gene LinkOut

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