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    zinc knuckle (CCHC-type) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835000, updated on 18-Sep-2024

    Summary

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    Official Full Name
    zinc knuckle (CCHC-type) family protein
    Primary source
    TAIR:AT5G49400
    Locus tag
    AT5G49400
    See related
    Araport:AT5G49400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    K7J8.7; K7J8_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    2
    Sequence:
    Chromosome: 5; NC_003076.8 (20030652..20032283)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene beta-xylosidase 1 Neighboring gene serine/threonine-protein phosphatase 4 regulatory subunit-like protein Neighboring gene thiamine-phosphate synthase Neighboring gene MADS-box transcription factor family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_124317.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    zinc knuckle (CCHC-type) family protein
    NP_199751.2
    • zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878); Has 46316 Blast hits to 20637 proteins in 1119 species: Archae - 19; Bacteria - 12274; Metazoa - 18717; Fungi - 3822; Plants - 2024; Viruses - 338; Other Eukaryotes - 9122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      20030652..20032283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_124317.4 → NP_199751.2  zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_199751.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178URC4, Q6NMK2
      Conserved Domains (1) summary
      pfam13917
      Location:99 → 132
      zf-CCHC_3; Zinc knuckle
    Nucleotide Protein
    Heading Accession and Version

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