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    PHD finger transcription factor [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835975, updated on 18-Sep-2024

    Summary

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    Official Full Name
    PHD finger transcription factor
    Primary source
    TAIR:AT5G58610
    Locus tag
    AT5G58610
    See related
    Araport:AT5G58610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MZN1.7; MZN1_7
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    11
    Sequence:
    Chromosome: 5; NC_003076.8 (23686079..23691394, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828) Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene ncRNA Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001345306.1
    NM_001345307.1
    NM_001345313.1
    NM_001345314.1
    NM_001345315.1
    NM_125248.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    PHD finger transcription factor
    NP_200669.1
    • PHD finger transcription factor, putative; FUNCTIONS IN: RNA binding, DNA binding, zinc ion binding; INVOLVED IN: N-terminal protein myristoylation, regulation of transcription, DNA-dependent, response to chitin; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Acyl-CoA N-acyltransferase (InterPro:IPR016181), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein (TAIR:AT1G05380.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23686079..23691394 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345310.1 → NP_001330112.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8B9U2

    2. NM_001345309.1 → NP_001330120.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, Q9LUZ5

    3. NM_001345308.1 → NP_001330115.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T2

    4. NM_001345311.1 → NP_001330113.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T3

    5. NM_001345312.1 → NP_001330114.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T1

    6. NM_125248.1 → NP_200669.1  PHD finger transcription factor [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200669.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, F4KGA3
      Conserved Domains (6) summary
      cd04301
      Location:868 → 928
      NAT_SF; N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate
      smart00743
      Location:106 → 161
      Agenet; Tudor-like domain present in plant sequences
      cd15539
      Location:697 → 736
      PHD1_AIRE; PHD finger 1 found in autoimmune regulator (AIRE)
      pfam05641
      Location:26 → 98
      Agenet; Agenet domain
      pfam16135
      Location:585 → 657
      Jas; TPL-binding domain in jasmonate signalling
      cl22851
      Location:738 → 773
      PHD_SF; PHD finger superfamily

    7. NM_001345313.1 → NP_001330119.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9R9

    8. NM_001345314.1 → NP_001330111.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T2

    9. NM_001345315.1 → NP_001330116.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T4

    10. NM_001345306.1 → NP_001330117.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T6

    11. NM_001345307.1 → NP_001330118.1  PHD finger transcription factor [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQZ7, A0A1P8B9T7
    Nucleotide Protein
    Heading Accession and Version

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