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    FIP2 FRIGIDA interacting protein 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827414, updated on 18-Sep-2024

    Summary

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    Official Symbol
    FIP2
    Official Full Name
    FRIGIDA interacting protein 2
    Primary source
    TAIR:AT4G17060
    Locus tag
    AT4G17060
    See related
    Araport:AT4G17060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    FRIGIDA interacting protein 2
    Summary
    Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.
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    Genomic context

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    See FIP2 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    1
    Sequence:
    Chromosome: 4; NC_003075.7 (9593381..9595350, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene CLP protease R subunit 4 Neighboring gene ureidoglycine aminohydrolase Neighboring gene peptidyl-prolyl cis-trans isomerase Neighboring gene Histone H3 K4-specific methyltransferase SET7/9 family protein Neighboring gene Putative membrane lipoprotein Neighboring gene chloroplast beta-amylase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. FRIGIDA delays flowering in Arabidopsis via a cotranscriptional mechanism involving direct interaction with the nuclear cap-binding complex. Geraldo N, et al. Plant Physiol, 2009 Jul. PMID 19429606, Free PMC Article
    2. The wavy growth 3 E3 ligase family controls the gravitropic response in Arabidopsis roots. Sakai T, et al. Plant J, 2012 Apr. PMID 22122664
    3. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    4. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_117810.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    FRIGIDA interacting protein 2
    NP_193439.1
    • FRIGIDA interacting protein 2 (FIP2); FUNCTIONS IN: protein binding; LOCATED IN: nucleus, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (TAIR:AT2G44730.1); Has 125 Blast hits to 125 proteins in 25 species: Archae - 0; Bacteria - 4; Metazoa - 24; Fungi - 8; Plants - 81; Viruses - 2; Other Eukaryotes - 6 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9593381..9595350 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117810.7 → NP_193439.1  FRIGIDA interacting protein 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193439.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23550
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O23550.1

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