U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tpbpa trophoblast specific protein alpha [ Rattus norvegicus (Norway rat) ]

    Gene ID: 64509, updated on 27-Nov-2024

    Summary

    Official Symbol
    Tpbpaprovided by RGD
    Official Full Name
    trophoblast specific protein alphaprovided by RGD
    Primary source
    RGD:621454
    See related
    EnsemblRapid:ENSRNOG00000039975 AllianceGenome:RGD:621454
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tpbp
    Expression
    Restricted expression toward (RPKM 3.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tpbpa in Genome Data Viewer
    Location:
    17p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (3804659..3807029)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (3799046..3801416)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (4165041..4167411)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene cathepsin J Neighboring gene cathepsin M like 1 Neighboring gene cytotoxic T lymphocyte-associated protein 2 alpha Neighboring gene testin gene Neighboring gene thioredoxin-related transmembrane protein 3, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    trophoblast specific protein alpha
    Names
    spongiotrophoblast specific protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172073.1NP_742070.1  trophoblast specific protein alpha precursor

      See identical proteins and their annotated locations for NP_742070.1

      Status: PROVISIONAL

      Source sequence(s)
      AB009890
      UniProtKB/TrEMBL
      F7EWR8, O88206
      Related
      ENSRNOP00000058146.2, ENSRNOT00000061427.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      3804659..3807029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)