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    si:ch211-214e3.5 si:ch211-214e3.5 [ Danio rerio (zebrafish) ]

    Gene ID: 798582, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:ch211-214e3.5provided by ZNC
    Official Full Name
    si:ch211-214e3.5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050208-19
    See related
    Ensembl:ENSDARG00000074270 AllianceGenome:ZFIN:ZDB-GENE-050208-19
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd99b12; im:6912447; wu:fd99b12
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in myotome. Orthologous to human ZNF518A (zinc finger protein 518A). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:ch211-214e3.5 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (29223278..29233346, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (29108382..29119332, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110440146 Neighboring gene adhesion G protein-coupled receptor A1a Neighboring gene mix-type homeobox gene 2 Neighboring gene BMS1 ribosome biogenesis factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Ribosome biogenesis factor Bms1-like is essential for liver development in zebrafish. Wang Y, et al. J Genet Genomics, 2012 Sep 20. PMID 23021545
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 518A
    Names
    zmp:0000000745

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      29223278..29233346 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480358.2 → XP_021336033.1  zinc finger protein 518A

      UniProtKB/TrEMBL
      A0A8M1Q1Q9, U3JAE4
      Related
      ENSDARP00000127211.1, ENSDART00000153175.2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394849.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      299144..309212 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001338990.9 → XP_001339026.1  zinc finger protein 518A

      UniProtKB/TrEMBL
      A0A8M1Q1Q9, U3JAE4
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials