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    pphln1 periphilin 1 [ Danio rerio (zebrafish) ]

    Gene ID: 790935, updated on 9-Dec-2024

    Summary

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    Official Symbol
    pphln1provided by ZNC
    Official Full Name
    periphilin 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-1873
    See related
    Ensembl:ENSDARG00000045692 AllianceGenome:ZFIN:ZDB-GENE-030131-1873
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb83c09; zgc:158246; si:ch211-155a11.2
    Summary
    Predicted to be involved in negative regulation of gene expression, epigenetic and protein localization to heterochromatin. Predicted to act upstream of or within negative regulation of DNA-templated transcription. Predicted to be active in nucleoplasm. Orthologous to human PPHLN1 (periphilin 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See pphln1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (13931725..13963440)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (13932716..13964591)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene YY1 associated factor 2 Neighboring gene zinc finger CCHC-type and RNA binding motif 1 Neighboring gene prickle homolog 1b Neighboring gene pseudouridylate synthase PUS7L-like Neighboring gene uncharacterized LOC137491529

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    periphilin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080080.1 → NP_001073549.1  periphilin-1

      See identical proteins and their annotated locations for NP_001073549.1

      Status: PROVISIONAL

      Source sequence(s)
      BC128824
      UniProtKB/TrEMBL
      A1A5V1
      Related
      ENSDARP00000067174.5, ENSDART00000067175.7
      Conserved Domains (1) summary
      pfam11488
      Location:290 → 346
      Lge1; Transcriptional regulatory protein LGE1

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      13931725..13963440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021475141.2 → XP_021330816.1  periphilin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q633
      Conserved Domains (2) summary
      pfam11488
      Location:321 → 377
      Lge1; Transcriptional regulatory protein LGE1
      cl26464
      Location:81 → 305
      Atrophin-1; Atrophin-1 family
    Nucleotide Protein Strain
    Heading Accession and Version

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