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    sb:cb1058 sb:cb1058 [ Danio rerio (zebrafish) ]

    Gene ID: 394209, updated on 9-Dec-2024

    Summary

    Official Symbol
    sb:cb1058provided by ZNC
    Official Full Name
    sb:cb1058provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040108-9
    See related
    Ensembl:ENSDARG00000099819 AllianceGenome:ZFIN:ZDB-GENE-040108-9
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Is expressed in intestinal bulb primordium; liver; notochord; otic vesicle; and pleuroperitoneal region. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See sb:cb1058 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (25033939..25040975)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (24762749..24769815)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 40, NatD catalytic subunit Neighboring gene beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I) Neighboring gene si:dkey-23i12.5 Neighboring gene small nucleolar RNA SNORD31 Neighboring gene small nucleolar RNA SNORD29

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    uncharacterized protein LOC394209

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001386723.1NP_001373652.1  uncharacterized protein LOC394209

      Status: VALIDATED

      Source sequence(s)
      AL954715
      UniProtKB/TrEMBL
      A0A0R4IHZ3, A0A8M1RKA1
      Related
      ENSDARP00000137610.1, ENSDART00000170873.2

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      25033939..25040975
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394690.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      7679..14715
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)