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    ilf3b interleukin enhancer binding factor 3b [ Danio rerio (zebrafish) ]

    Gene ID: 321868, updated on 9-Dec-2024

    Summary

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    Official Symbol
    ilf3bprovided by ZNC
    Official Full Name
    interleukin enhancer binding factor 3bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-587
    See related
    Ensembl:ENSDARG00000105177 AllianceGenome:ZFIN:ZDB-GENE-030131-587
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    ilf3; zgc:77030; wu:fb37d07; wu:fb94b02
    Summary
    Predicted to enable double-stranded RNA binding activity; mRNA 3'-UTR AU-rich region binding activity; and single-stranded RNA binding activity. Predicted to be involved in spliceosome-depend formation of circular RNA. Predicted to act upstream of or within defense response to virus. Predicted to be located in cytoplasm and nucleolus. Orthologous to human ILF3 (interleukin enhancer binding factor 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ilf3b in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (13842581..13877697)
    105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (13692693..13727851)

    Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene WIZ zinc finger b Neighboring gene prostaglandin E receptor 1b (subtype EP1) Neighboring gene phenylalanyl-tRNA synthetase subunit alpha Neighboring gene synaptonemal complex central element protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Analysis of protein expression in zebrafish during gonad differentiation by targeted proteomics. Groh KJ, et al. Gen Comp Endocrinol, 2013 Nov 1. PMID 23968773
    2. RNA-Seq analysis in mutant zebrafish reveals role of U1C protein in alternative splicing regulation. Rösel TD, et al. EMBO J, 2011 May 18. PMID 21468032, Free PMC Article
    3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables double-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables mRNA 3'-UTR AU-rich region binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables single-stranded RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in spliceosome-depend formation of circular RNA ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    interleukin enhancer-binding factor 3 homolog
    Names
    interleukin enhancer binding factor 3, 90kDa

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212599.1 → NP_997764.1  interleukin enhancer-binding factor 3 homolog

      See identical proteins and their annotated locations for NP_997764.1

      Status: PROVISIONAL

      Source sequence(s)
      BC067172
      UniProtKB/Swiss-Prot
      Q6NXA4, Q802W3
      Related
      ENSDARP00000140809.1, ENSDART00000162317.2
      Conserved Domains (2) summary
      smart00572
      Location:90 → 344
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00358
      Location:406 → 470
      DSRM; Double-stranded RNA binding motif

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007114.7 Reference GRCz11 Primary Assembly

      Range
      13842581..13877697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068215805.1 → XP_068071906.1  interleukin enhancer-binding factor 3 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8M3AXS5

    2. XM_005163739.5 → XP_005163796.1  interleukin enhancer-binding factor 3 homolog isoform X2

      UniProtKB/Swiss-Prot
      Q6NXA4, Q802W3
      UniProtKB/TrEMBL
      A0A8M2BAV0
      Conserved Domains (2) summary
      smart00572
      Location:90 → 344
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00358
      Location:406 → 470
      DSRM; Double-stranded RNA binding motif

    3. XM_005163741.4 → XP_005163798.1  interleukin enhancer-binding factor 3 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q6NXA4, Q802W3
      UniProtKB/TrEMBL
      A0A8M2BB13
      Conserved Domains (2) summary
      smart00572
      Location:90 → 343
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00358
      Location:405 → 469
      DSRM; Double-stranded RNA binding motif

    4. XM_068215791.1 → XP_068071892.1  interleukin enhancer-binding factor 3 homolog isoform X3

      UniProtKB/Swiss-Prot
      Q6NXA4, Q802W3

    5. XM_005163740.5 → XP_005163797.1  interleukin enhancer-binding factor 3 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8M2BAZ5
      Conserved Domains (2) summary
      smart00572
      Location:90 → 344
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00358
      Location:406 → 470
      DSRM; Double-stranded RNA binding motif

    6. XM_068215801.1 → XP_068071902.1  interleukin enhancer-binding factor 3 homolog isoform X6

    7. XM_005163742.5 → XP_005163799.1  interleukin enhancer-binding factor 3 homolog isoform X5

      UniProtKB/TrEMBL
      A0A8M2BAW0
      Conserved Domains (2) summary
      smart00572
      Location:90 → 343
      DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
      smart00358
      Location:405 → 469
      DSRM; Double-stranded RNA binding motif

    8. XM_068215804.1 → XP_068071905.1  interleukin enhancer-binding factor 3 homolog isoform X7

    9. XM_068215806.1 → XP_068071907.1  interleukin enhancer-binding factor 3 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8M3AXS5

    10. XM_068215807.1 → XP_068071908.1  interleukin enhancer-binding factor 3 homolog isoform X8

      UniProtKB/TrEMBL
      A0A8M3AXS5
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NXA4.2 GenPept UniProtKB/Swiss-Prot:Q6NXA4

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