zmat1 zinc finger matrin-type 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zmat1provided by ZNC
Official Full Name: zinc finger matrin-type 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-050913-63
See related: Ensembl:ENSDARG00000058679 AllianceGenome:ZFIN:ZDB-GENE-050913-63
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:114104
Summary: Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleus. Is expressed in several structures, including brain; epidermis; forerunner cell group; neural crest; and notochord. Orthologous to human ZMAT1 (zinc finger matrin-type 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (11521168..11529370)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (11428536..11436742)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: zinc finger matrin-type protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001030231.1 → NP_001025402.1 zinc finger matrin-type protein 1

See identical proteins and their annotated locations for NP_001025402.1

Status: PREDICTED

Source sequence(s)

BC097164

UniProtKB/TrEMBL

A0A8M9PQK2, Q4V8W9

Related

ENSDARP00000118594.1, ENSDART00000139267.2

Conserved Domains (3) summary

smart00451
Location:108 → 142

ZnF_U1; U1-like zinc finger

sd00020
Location:113 → 135

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam12874
Location:159 → 182

zf-met; Zinc-finger of C2H2 type