U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    znf318 zinc finger protein 318 [ Danio rerio (zebrafish) ]

    Gene ID: 100330539, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    znf318provided by ZNC
    Official Full Name
    zinc finger protein 318provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-251
    See related
    Ensembl:ENSDARG00000090054 AllianceGenome:ZFIN:ZDB-GENE-140106-251
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF318 (zinc finger protein 318). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See znf318 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (4307583..4333179, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (4179083..4204688, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 Neighboring gene male-enhanced antigen 1 Neighboring gene protein phosphatase 2, regulatory subunit B', delta Neighboring gene si:dkeyp-121d4.3 Neighboring gene SFT2 domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 318
    Names
    zmp:0000001291

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      4307583..4333179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068212998.1 → XP_068069099.1  zinc finger protein 318

      UniProtKB/TrEMBL
      A0A8M1RKK4, E7EYC3

    2. XM_068212997.1 → XP_068069098.1  zinc finger protein 318

      UniProtKB/TrEMBL
      A0A8M1RKK4, E7EYC3
      Related
      ENSDARP00000111802.1, ENSDART00000122406.3

    3. XM_005156510.5 → XP_005156567.1  zinc finger protein 318

      See identical proteins and their annotated locations for XP_005156567.1

      UniProtKB/TrEMBL
      A0A8M1RKK4, E7EYC3
      Conserved Domains (3) summary
      PHA02896
      Location:1083 → 1210
      PHA02896; A-type inclusion like protein; Provisional
      smart00451
      Location:927 → 961
      ZnF_U1; U1-like zinc finger
      cl15483
      Location:1863 → 1983
      Hid1; High-temperature-induced dauer-formation protein

    RNA

    1. XR_663160.4 RNA Sequence

    2. XR_002459827.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.