slc27a4 solute carrier family 27 member 4 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc27a4provided by ZNC
Official Full Name: solute carrier family 27 member 4provided by ZNC
Primary source: ZFIN:ZDB-GENE-050417-248
See related: Ensembl:ENSDARG00000017047 AllianceGenome:ZFIN:ZDB-GENE-050417-248
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fatp4; sb:eu977; zgc:112138
Summary: Predicted to enable long-chain fatty acid transmembrane transporter activity and oleoyl-CoA ligase activity. Predicted to be involved in long-chain fatty acid import into cell; long-chain fatty acid metabolic process; and medium-chain fatty acid transport. Predicted to act upstream of or within lipid metabolic process. Predicted to be active in endoplasmic reticulum membrane and plasma membrane. Is expressed in intestinal bulb and intestine. Orthologous to human SLC27A4 (solute carrier family 27 member 4). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 10

Exon count:: 13

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	10	NC_007121.7 (10738880..10782801)
105	previous assembly	GRCz10 (GCF_000002035.5)	10	NC_007121.6 (10780590..10824563)

Chromosome 10 - NC_007121.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fi81h11.y1 (e-PCR)
- UniSTS:198071

fk20c06.y1 (e-PCR)
- UniSTS:200631

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables ligase activity	IEA Inferred from Electronic Annotation more info
enables long-chain fatty acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables long-chain fatty acid-CoA ligase activity	IEA Inferred from Electronic Annotation more info
enables oleoyl-CoA ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
involved_in long-chain fatty acid import into cell	IBA Inferred from Biological aspect of Ancestor more info
involved_in long-chain fatty acid metabolic process	IBA Inferred from Biological aspect of Ancestor more info
involved_in medium-chain fatty acid transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum membrane	IBA Inferred from Biological aspect of Ancestor more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: long-chain fatty acid transport protein 4

Names: solute carrier family 27 (fatty acid transporter), member 4

NP_001017737.1

EC 6.2.1.3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017737.1 → NP_001017737.1 long-chain fatty acid transport protein 4

See identical proteins and their annotated locations for NP_001017737.1

Status: PROVISIONAL

Source sequence(s)

BC093216

UniProtKB/TrEMBL

Q567D7

Related

ENSDARP00000012791.7, ENSDART00000004181.9

Conserved Domains (2) summary

cd05939
Location:99 → 608

hsFATP4_like; Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

PRK08279
Location:73 → 643

PRK08279; long-chain-acyl-CoA synthetase; Validated