chpt1 choline phosphotransferase 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: chpt1provided by ZNC
Official Full Name: choline phosphotransferase 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-1325
See related: Ensembl:ENSDARG00000014572 AllianceGenome:ZFIN:ZDB-GENE-030131-1325
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: sycp3; fd50f07; wu:fb67a04; wu:fd50f07
Summary: Predicted to enable diacylglycerol cholinephosphotransferase activity. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Is expressed in several structures, including digestive system; notochord; polster; tegmentum; and yolk syncytial layer. Orthologous to human CHPT1 (choline phosphotransferase 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 4

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	4	NC_007115.7 (17707008..17725008, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	4	NC_007115.6 (17718032..17736032, complement)

Chromosome 4 - NC_007115.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Immunohistochemical observations revealed that Sycp3 is specifically localized in spermatocytes in typical nuclear patterns at each meiotic stage.
Title: Evaluation of Sycp3, Plzf and Cyclin B3 expression and suitability as spermatogonia and spermatocyte markers in zebrafish.

Submit: New GeneRIF Correction

General gene information

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Markers

fd50f07.x1 (e-PCR)
- UniSTS:195585

fb67a10 (e-PCR)
- UniSTS:189069

fb67a04.x1 (e-PCR)
- UniSTS:187344

fc38h12.x1 (e-PCR)
- UniSTS:193748

fb49f01.x1 (e-PCR)
- UniSTS:203241

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables diacylglycerol cholinephosphotransferase activity	IBA Inferred from Biological aspect of Ancestor more info
enables diacylglycerol cholinephosphotransferase activity	IEA Inferred from Electronic Annotation more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables phosphotransferase activity, for other substituted phosphate groups	IEA Inferred from Electronic Annotation more info
enables transferase activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phospholipid biosynthetic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in Golgi apparatus	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi apparatus	IEA Inferred from Electronic Annotation more info
located_in Golgi membrane	IEA Inferred from Electronic Annotation more info
is_active_in endoplasmic reticulum membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cholinephosphotransferase 1

Names: diacylglycerol cholinephosphotransferase 1; synaptonemal complex protein 3

NP_997789.1

EC 2.7.8.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.