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    si:dkey-251i10.3 si:dkey-251i10.3 [ Danio rerio (zebrafish) ]

    Gene ID: 553498, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:dkey-251i10.3provided by ZNC
    Official Full Name
    si:dkey-251i10.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060526-271
    See related
    Ensembl:ENSDARG00000042520 AllianceGenome:ZFIN:ZDB-GENE-060526-271
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to several human genes including UTP14C (UTP14C small subunit processome component). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:dkey-251i10.3 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (67474119..67499283, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (66795750..66820914, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:dkey-251i10.1 Neighboring gene si:dkey-251i10.2 Neighboring gene zinc finger and BTB domain containing 20 Neighboring gene testis expressed 55

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    acts_upstream_of_or_within rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC553498
    Names
    UTP14, U3 small nucleolar ribonucleoprotein, homolog A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001256628.1 → NP_001243557.1  uncharacterized protein LOC553498

      Status: VALIDATED

      Source sequence(s)
      CR786568
      UniProtKB/TrEMBL
      A0A8M1P3I4, A2CEY8, E7F556
      Related
      ENSDARP00000105713.2, ENSDART00000128050.3
      Conserved Domains (2) summary
      pfam04615
      Location:39 → 734
      Utp14; Utp14 protein
      cl19818
      Location:266 → 308
      DUF106; Integral membrane protein DUF106

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      67474119..67499283 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005165628.5 → XP_005165685.1  uncharacterized protein LOC553498 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BCW9
      Conserved Domains (2) summary
      pfam04615
      Location:39 → 733
      Utp14; Utp14 protein
      cl19818
      Location:266 → 308
      DUF106; Integral membrane protein DUF106
    Nucleotide Protein
    Heading Accession and Version

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