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    zcchc7 zinc finger, CCHC domain containing 7 [ Danio rerio (zebrafish) ]

    Gene ID: 317641, updated on 27-Dec-2024

    Summary

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    Official Symbol
    zcchc7provided by ZNC
    Official Full Name
    zinc finger, CCHC domain containing 7provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030102-2
    See related
    Ensembl:ENSDARG00000055443 AllianceGenome:ZFIN:ZDB-GENE-030102-2
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zcchc7l; chunp6893; flj22611l
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC7 (zinc finger CCHC-type containing 7). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See zcchc7 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 1 NC_007112.7 (21610249..21714025, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 1 NC_007112.6 (20917312..21021090, complement)

    Chromosome 1 - NC_007112.7Genomic Context describing neighboring genes Neighboring gene primase and polymerase (DNA-directed) Neighboring gene ADAMTS-like 7 Neighboring gene si:ch211-134c9.2 Neighboring gene paired box 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Alterations of protein profile in zebrafish liver cells exposed to methyl parathion: a membrane proteomics approach. Huang Q, et al. Chemosphere, 2012 Mar. PMID 22182705
    2. Rmrp Mutation Disrupts Chondrogenesis and Bone Ossification in Zebrafish Model of Cartilage-Hair Hypoplasia via Enhanced Wnt/β-Catenin Signaling. Sun X, et al. J Bone Miner Res, 2019 Nov. PMID 31237961
    3. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Golling G, et al. Nat Genet, 2002 Jun. PMID 12006978
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCHC domain-containing protein 7
    Names
    zinc finger, CCHC domain containing 7- like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301358.3 → NP_001288287.2  zinc finger CCHC domain-containing protein 7

      Status: VALIDATED

      Source sequence(s)
      BX284619, BX511134, CR786570
      UniProtKB/TrEMBL
      A0A8M1P1I0, F1QLY2
      Related
      ENSDARP00000106239.2, ENSDART00000129066.3
      Conserved Domains (1) summary
      PTZ00368
      Location:254 → 396
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007112.7 Reference GRCz11 Primary Assembly

      Range
      21610249..21714025 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307728.4 → XP_009306003.1  zinc finger CCHC domain-containing protein 7 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B5M8
      Conserved Domains (1) summary
      PTZ00368
      Location:265 → 407
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394478.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      207469..253967 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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