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    edrf1 erythroid differentiation regulatory factor 1 [ Danio rerio (zebrafish) ]

    Gene ID: 566404, updated on 4-Jan-2025

    Summary

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    Official Symbol
    edrf1provided by ZNC
    Official Full Name
    erythroid differentiation regulatory factor 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-131121-620
    See related
    Ensembl:ENSDARG00000019834 AllianceGenome:ZFIN:ZDB-GENE-131121-620
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    gb:gw712215; si:rp71-40n14.4
    Summary
    Predicted to be involved in positive regulation of DNA-templated transcription. Is expressed in spermatid. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See edrf1 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (8754077..8792078)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (8596883..8634898)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene C-terminal binding protein 2a Neighboring gene testis expressed 36 Neighboring gene tonsoku-like, DNA repair protein Neighboring gene NK-lysin tandem duplicate 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour. Rey S, et al. BMC Genomics, 2021 Jan 7. PMID 33413108, Free PMC Article
    2. Zebrafish Nk-lysins: First insights about their cellular and functional diversification. Pereiro P, et al. Dev Comp Immunol, 2015 Jul. PMID 25813149
    3. Single Cell Transcriptome Sequencing of Zebrafish Testis Revealed Novel Spermatogenesis Marker Genes and Stronger Leydig-Germ Cell Paracrine Interactions. Qian P, et al. Front Genet, 2022. PMID 35360857, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    erythroid differentiation-related factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      8754077..8792078
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467293.2 → XP_021322968.1  erythroid differentiation-related factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IK17, A0A8M9PCJ0
      Related
      ENSDARP00000146470.1, ENSDART00000185519.1

    2. XM_689672.10 → XP_694764.4  erythroid differentiation-related factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A8N7TFC7, E7F5M5
      Related
      ENSDARP00000096094.2, ENSDART00000105322.5

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394977.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      21543..59544
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473082.2 → XP_021328757.1  erythroid differentiation-related factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R4IK17, A0A8M9PCJ0

    2. XM_021473083.2 → XP_021328758.1  erythroid differentiation-related factor 1 isoform X2

      UniProtKB/TrEMBL
      A0A8N7TFC7, E7F5M5
    Nucleotide Protein
    Heading Accession and Version

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