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    dnajc18 DnaJ (Hsp40) homolog, subfamily C, member 18 [ Danio rerio (zebrafish) ]

    Gene ID: 559928, updated on 9-Dec-2024

    Summary

    Official Symbol
    dnajc18provided by ZNC
    Official Full Name
    DnaJ (Hsp40) homolog, subfamily C, member 18provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8019
    See related
    Ensembl:ENSDARG00000056005 AllianceGenome:ZFIN:ZDB-GENE-030131-8019
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj47b06; wu:fj47b06; zgc:172228
    Summary
    Predicted to enable Hsp70 protein binding activity. Predicted to be involved in cellular response to misfolded protein and chaperone cofactor-dependent protein refolding. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human DNAJC18 (DnaJ heat shock protein family (Hsp40) member C18). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See dnajc18 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (30239549..30254049, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (30202854..30217354, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137488826 Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene bromodomain containing 8a Neighboring gene family with sequence similarity 53 member C Neighboring gene stem-loop binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables Hsp70 protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in cellular response to misfolded protein IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in chaperone cofactor-dependent protein refolding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in endoplasmic reticulum membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    dnaJ homolog subfamily C member 18

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113588.1NP_001107060.1  dnaJ homolog subfamily C member 18

      See identical proteins and their annotated locations for NP_001107060.1

      Status: PROVISIONAL

      Source sequence(s)
      BC154601
      UniProtKB/TrEMBL
      A8WG70, B7ZV24, F6NXK8
      Related
      ENSDARP00000091828.4, ENSDART00000101054.5
      Conserved Domains (2) summary
      pfam00226
      Location:121182
      DnaJ; DnaJ domain
      pfam09320
      Location:299399
      DUF1977; Domain of unknown function (DUF1977)

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      30239549..30254049 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)