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    h3f3c H3 histone, family 3C [ Danio rerio (zebrafish) ]

    Gene ID: 336231, updated on 4-Jan-2025

    Summary

    Official Symbol
    h3f3cprovided by ZNC
    Official Full Name
    H3 histone, family 3Cprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-8175
    See related
    Ensembl:ENSDARG00000033009 AllianceGenome:ZFIN:ZDB-GENE-030131-8175
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fj58b09; zgc:64222; wu:fj58b09
    Summary
    Orthologous to human H3-3A (H3.3 histone A) and H3-3B (H3.3 histone B). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
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    Genomic context

    See h3f3c in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (36945262..36949476, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36345109..36349323, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene kaptin (actin binding protein) Neighboring gene cone-rod homeobox Neighboring gene uncharacterized LOC137495609 Neighboring gene gap junction protein delta 1a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200003.1NP_956297.1  H3 histone, family 3C

      See identical proteins and their annotated locations for NP_956297.1

      Status: PROVISIONAL

      Source sequence(s)
      BC057444
      UniProtKB/Swiss-Prot
      A5PL96, Q6PI20, Q7ZV67
      UniProtKB/TrEMBL
      B2GSF5
      Related
      ENSDARP00000047268.5, ENSDART00000047269.7
      Conserved Domains (1) summary
      PTZ00018
      Location:1136
      PTZ00018; histone H3; Provisional

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      36945262..36949476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394595.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      194513..198749 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)