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    acss3 acyl-CoA synthetase short chain family member 3 [ Danio rerio (zebrafish) ]

    Gene ID: 566019, updated on 9-Dec-2024

    Summary

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    Official Symbol
    acss3provided by ZNC
    Official Full Name
    acyl-CoA synthetase short chain family member 3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060503-816
    See related
    Ensembl:ENSDARG00000032218 AllianceGenome:ZFIN:ZDB-GENE-060503-816
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-231a18.1
    Summary
    Predicted to enable propionate-CoA ligase activity. Predicted to act upstream of or within lipid metabolic process. Predicted to be active in mitochondrial matrix. Orthologous to human ACSS3 (acyl-CoA synthetase short chain family member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See acss3 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (21867115..21957949)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (22146160..22236872)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene microRNA mir-3906 Neighboring gene myogenic factor 5 Neighboring gene lin-7 homolog A (C. elegans) Neighboring gene PTPRF interacting protein alpha 2 Neighboring gene uncharacterized LOC137491548 Neighboring gene hematopoietic cell-specific Lyn substrate 1 Neighboring gene LLP homolog, long-term synaptic facilitation factor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Evidence for 26 distinct acyl-coenzyme A synthetase genes in the human genome. Watkins PA, et al. J Lipid Res, 2007 Dec. PMID 17762044
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables acetate-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables propionate-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    acyl-CoA synthetase short-chain family member 3, mitochondrial
    XP_694376.3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      21867115..21957949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_689284.10 → XP_694376.3  acyl-CoA synthetase short-chain family member 3, mitochondrial

      UniProtKB/TrEMBL
      A0A8N7TBI0
      Related
      ENSDARP00000116558.1, ENSDART00000140400.2
      Conserved Domains (2) summary
      PRK10524
      Location:83 → 707
      prpE; propionyl-CoA synthetase; Provisional
      cd05967
      Location:93 → 701
      PrpE; Propionyl-CoA synthetase (PrpE)
    Nucleotide Protein Strain
    Heading Accession and Version

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