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    znf385a zinc finger protein 385A [ Danio rerio (zebrafish) ]

    Gene ID: 100147851, updated on 4-Jan-2025

    Summary

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    Official Symbol
    znf385aprovided by ZNC
    Official Full Name
    zinc finger protein 385Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-090313-255
    See related
    Ensembl:ENSDARG00000009899 AllianceGenome:ZFIN:ZDB-GENE-090313-255
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fj44b04; si:dkey-228g21.6
    Summary
    Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZNF385A (zinc finger protein 385A). [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    human mouse all
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    Genomic context

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    See znf385a in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (28180409..28317205, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (28257792..28368667, complement)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1, like a Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1a Neighboring gene tachykinin precursor 3a Neighboring gene baculoviral IAP repeat containing 5b Neighboring gene neuronal differentiation 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Spermidine, but not spermine, is essential for pigment pattern formation in zebrafish. Frohnhöfer HG, et al. Biol Open, 2016 Jun 15. PMID 27215328, Free PMC Article
    2. Genome-wide, whole mount in situ analysis of transcriptional regulators in zebrafish embryos. Armant O, et al. Dev Biol, 2013 Aug 15. PMID 23684812, Free PMC Article
    3. Molecular analyses of zebrafish V0v spinal interneurons and identification of transcriptional regulators downstream of Evx1 and Evx2 in these cells. England SJ, et al. Neural Dev, 2023 Nov 28. PMID 38017520, Free PMC Article
    4. Discovery and characterization of novel vascular and hematopoietic genes downstream of etsrp in zebrafish. Gomez GA, et al. PLoS One, 2009. PMID 19308258, Free PMC Article
    5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 385A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      28180409..28317205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068216915.1 → XP_068073016.1  zinc finger protein 385A isoform X1

    2. XM_009296959.4 → XP_009295234.1  zinc finger protein 385A isoform X2

      UniProtKB/TrEMBL
      A0A8M3AN31
      Related
      ENSDARP00000114725.1, ENSDART00000139537.2
      Conserved Domains (2) summary
      sd00020
      Location:237 → 259
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:78 → 100
      zf-met; Zinc-finger of C2H2 type

    3. XM_009296960.4 → XP_009295235.1  zinc finger protein 385A isoform X3

      UniProtKB/TrEMBL
      A0A8M3B6A0
      Conserved Domains (2) summary
      sd00020
      Location:217 → 239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:58 → 80
      zf-met; Zinc-finger of C2H2 type

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395155.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      132058..274260 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068219061.1 → XP_068075162.1  zinc finger protein 385A isoform X1

    2. XM_021473702.2 → XP_021329377.1  zinc finger protein 385A isoform X2

      UniProtKB/TrEMBL
      A0A8M9PE38
      Conserved Domains (2) summary
      sd00020
      Location:237 → 259
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:300 → 324
      zf-met; Zinc-finger of C2H2 type

    3. XM_021473703.2 → XP_021329378.1  zinc finger protein 385A isoform X3

      UniProtKB/TrEMBL
      A0A8M9PQT6
      Conserved Domains (2) summary
      sd00020
      Location:217 → 239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam12874
      Location:280 → 304
      zf-met; Zinc-finger of C2H2 type
    Nucleotide Protein Strain
    Heading Accession and Version

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