U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    szrd1 SUZ RNA binding domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 554231, updated on 9-Dec-2024

    Summary

    Official Symbol
    szrd1provided by ZNC
    Official Full Name
    SUZ RNA binding domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050522-55
    See related
    Ensembl:ENSDARG00000056338 AllianceGenome:ZFIN:ZDB-GENE-050522-55
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb15h05; wu:fk86c07; zgc:109926
    Summary
    Orthologous to human SZRD1 (SUZ RNA binding domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See szrd1 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (24501951..24508166)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (24575410..24581625)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100535539 Neighboring gene transmembrane protein 82 Neighboring gene sulfotransferase family 1, cytosolic sulfotransferase 5 Neighboring gene ATPase cation transporting 13A2 Neighboring gene si:dkey-31b16.11

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC109926

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    SUZ RNA-binding domain-containing
    Names
    SUZ domain-containing protein 1
    UPF0485 protein C1orf144 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030076.2NP_001025247.1  SUZ RNA-binding domain-containing

      See identical proteins and their annotated locations for NP_001025247.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095055
      UniProtKB/Swiss-Prot
      Q504E7
      Related
      ENSDARP00000073284.4, ENSDART00000078824.5
      Conserved Domains (2) summary
      pfam12752
      Location:60111
      SUZ; SUZ domain
      pfam12901
      Location:143159
      SUZ-C; SUZ-C motif

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      24501951..24508166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395151.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      134174..140389
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)