U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    si:ch1073-224n8.1 si:ch1073-224n8.1 [ Danio rerio (zebrafish) ]

    Gene ID: 327438, updated on 4-Jan-2025

    Summary

    Official Symbol
    si:ch1073-224n8.1provided by ZNC
    Official Full Name
    si:ch1073-224n8.1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5649
    See related
    Ensembl:ENSDARG00000104485 AllianceGenome:ZFIN:ZDB-GENE-030131-5649
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi11a05; wu:fi11a05
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See si:ch1073-224n8.1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (37504310..37510887)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (36904134..36910746)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene kelch-like family member 13 Neighboring gene uncharacterized LOC137495610 Neighboring gene leucine-rich repeat neuronal protein 4 Neighboring gene latent transforming growth factor beta binding protein 3 Neighboring gene transfer RNA methionine (anticodon CAU) Neighboring gene transfer RNA methionine (anticodon CAU)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC327438; uncharacterized protein si:ch1073-224n8.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      37504310..37510887
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001921528.6XP_001921563.1  uncharacterized protein si:ch1073-224n8.1

      UniProtKB/TrEMBL
      A0A0R4IX00, A0A8M1QV16
      Related
      ENSDARP00000140978.1, ENSDART00000165465.2
      Conserved Domains (4) summary
      COG5048
      Location:389453
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:393413
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:405428
      zf-H2C2_2; Zinc-finger double domain
      cl19880
      Location:373418
      ROS_MUCR; ROS/MUCR transcriptional regulator protein