slc16a6b solute carrier family 16 member 6b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: slc16a6bprovided by ZNC
Official Full Name: solute carrier family 16 member 6bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-110208-3
See related: Ensembl:ENSDARG00000060246 AllianceGenome:ZFIN:ZDB-GENE-110208-3
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb51h06; wu:fb51h06
Summary: Predicted to enable monocarboxylic acid transmembrane transporter activity. Predicted to be involved in carboxylic acid transmembrane transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human SLC16A6 (solute carrier family 16 member 6). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 3

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	3	NC_007114.7 (36313192..36328675)
105	previous assembly	GRCz10 (GCF_000002035.5)	3	NC_007114.6 (36183805..36199077)

Chromosome 3 - NC_007114.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj92b10.y1 (e-PCR)
- UniSTS:200335

fb51h06.x1 (e-PCR)
- UniSTS:190659

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables monocarboxylic acid transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info
enables transmembrane transporter activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within transmembrane transport	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: solute carrier family 16 member 6b

Names: solute carrier family 16 (monocarboxylic acid transporters), member 6b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001365238.1 → NP_001352167.1 solute carrier family 16 member 6b

Status: VALIDATED

Source sequence(s)

CU855789

UniProtKB/TrEMBL

A0A8N7TEU2, I3ITI5

Related

ENSDARP00000126253.1, ENSDART00000151305.2

Conserved Domains (1) summary

cl26868
Location:17 → 512

2A0111; oxalate/formate antiporter family transporter