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    Mrps18b mitochondrial ribosomal protein S18B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294230, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrps18bprovided by RGD
    Official Full Name
    mitochondrial ribosomal protein S18Bprovided by RGD
    Primary source
    RGD:1302998
    See related
    EnsemblRapid:ENSRNOG00000000804 AllianceGenome:RGD:1302998
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ptd017
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in mitochondrial translation. Predicted to be located in cell junction and nucleoplasm. Predicted to be part of mitochondrial small ribosomal subunit. Predicted to be active in mitochondrion. Orthologous to human MRPS18B (mitochondrial ribosomal protein S18B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 363.0), Muscle (RPKM 321.1) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mrps18b in Genome Data Viewer
    Location:
    20p12
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (2842978..2849065)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (2838174..2844260)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (3344870..3350929)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene ATP binding cassette subfamily F member 1 Neighboring gene microRNA 877 Neighboring gene protein phosphatase 1, regulatory subunit 10 Neighboring gene alpha tubulin acetyltransferase 1 Neighboring gene similar to human chromosome 6 open reading frame 136 Neighboring gene DEAH-box helicase 16

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cell junction  
    located_in cell junction  
    part_of mitochondrial small ribosomal subunit  
    is_active_in mitochondrion  
    located_in mitochondrion  
    located_in nucleoplasm  
    located_in nucleoplasm  

    General protein information

    Preferred Names
    small ribosomal subunit protein mS40
    Names
    28S ribosomal protein S18b, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212534.2NP_997699.2  small ribosomal subunit protein mS40

      See identical proteins and their annotated locations for NP_997699.2

      Status: VALIDATED

      Source sequence(s)
      AA946550, BC166875, FM036709
      UniProtKB/TrEMBL
      A6KT69, F6Q5K7, Q6MG10
      Related
      ENSRNOP00000001058.6, ENSRNOT00000001058.9
      Conserved Domains (1) summary
      pfam01084
      Location:112164
      Ribosomal_S18; Ribosomal protein S18

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      2842978..2849065
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098476.2XP_038954404.1  small ribosomal subunit protein mS40 isoform X1

      UniProtKB/TrEMBL
      A6KT72
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