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    AGL30 AGAMOUS-like 30 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 814835, updated on 18-Sep-2024

    Summary

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    Official Symbol
    AGL30
    Official Full Name
    AGAMOUS-like 30
    Primary source
    TAIR:AT2G03060
    Locus tag
    AT2G03060
    See related
    Araport:AT2G03060
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AGAMOUS-like 30; T17M13.23; T17M13_23
    Summary
    Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing)family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.
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    Genomic context

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    See AGL30 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    12
    Sequence:
    Chromosome: 2; NC_003071.7 (901061..904149)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene mediator subunit 8 Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. MIKC* MADS domain heterodimers are required for pollen maturation and tube growth in Arabidopsis. Adamczyk BJ, et al. Plant Physiol, 2009 Apr. PMID 19211705, Free PMC Article
    2. Molecular and phylogenetic analyses of the complete MADS-box transcription factor family in Arabidopsis: new openings to the MADS world. Parenicová L, et al. Plant Cell, 2003 Jul. PMID 12837945, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001335151.1
    NM_001335152.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in pollen maturation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    AGAMOUS-like 30
    NP_001318186.1
    • AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 94 (TAIR:AT1G69540.1); Has 5791 Blast hits to 5791 proteins in 704 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 306; Plants - 4796; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    NP_001318187.1
    • AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 65 (TAIR:AT1G18750.1); Has 6155 Blast hits to 6155 proteins in 757 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 313; Plants - 5146; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      901061..904149
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335153.1 → NP_001323519.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTK2, A0A5S9WWQ8, F4IS82

    2. NM_001335154.1 → NP_001323520.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXD0

    3. NM_001335157.1 → NP_001323523.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTK2, A0A5S9WWQ8, F4IS82

    4. NM_001335155.1 → NP_001323521.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXD0

    5. NM_001335156.1 → NP_001323522.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AXD0

    6. NM_001335152.1 → NP_001318187.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MEI3, O80619, Q1PFA4
      UniProtKB/TrEMBL
      A0A178VTK2, A0A5S9WWQ8

    7. NM_001335151.1 → NP_001318186.1  AGAMOUS-like 30 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VTK2, A0A5S9WWQ8, F4IS82
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q1PFA4.1

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