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    CLE6 CLAVATA3/ESR-RELATED 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817664, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CLE6
    Official Full Name
    CLAVATA3/ESR-RELATED 6
    Primary source
    TAIR:AT2G31085
    Locus tag
    AT2G31085
    See related
    Araport:AT2G31085
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtCLE6; CLAVATA3/ESR-RELATED 6
    Summary
    Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. Can replace CLV3 function in vivo.
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    Genomic context

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    See CLE6 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    1
    Sequence:
    Chromosome: 2; NC_003071.7 (13254152..13254859)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CLAVATA3/ESR-RELATED 7 Neighboring gene CLAVATA3/ESR-RELATED 5 Neighboring gene uncharacterized protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene trichome birefringence-like protein (DUF828)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CLE6 expression recovers gibberellin deficiency to promote shoot growth in Arabidopsis. Bidadi H, et al. Plant J, 2014 Apr. PMID 24528333
    2. CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis. Meng L, et al. Proc Natl Acad Sci U S A, 2012 Jan 31. PMID 22307643, Free PMC Article
    3. A large family of genes that share homology with CLAVATA3. Cock JM, et al. Plant Physiol, 2001 Jul. PMID 11457943, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Root-expressed CLE6 is systemically involved in shoot growth under GA action in Arabidopsis.
      Title: CLE6 expression recovers gibberellin deficiency to promote shoot growth in Arabidopsis.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_128664.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in cell-cell signaling involved in cell fate commitment ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of lateral root development IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in regulation of root morphogenesis IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    CLAVATA3/ESR-RELATED 6
    NP_565713.1
    • CLAVATA3/ESR-RELATED 6 (CLE6); BEST Arabidopsis thaliana protein match is: CLAVATA3/ESR-RELATED 5 (TAIR:AT2G31083.1); Has 27 Blast hits to 27 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      13254152..13254859
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128664.2 → NP_565713.1  CLAVATA3/ESR-RELATED 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565713.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8S8N3
      UniProtKB/TrEMBL
      A0A178VSR3, A0A5S9X2Z0, A0A654EXQ9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8S8N3.1

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