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    EMB2766 structural constituent of nuclear pore [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819108, updated on 18-Sep-2024

    Summary

    Official Symbol
    EMB2766
    Official Full Name
    structural constituent of nuclear pore
    Primary source
    TAIR:AT2G45000
    Locus tag
    AT2G45000
    See related
    Araport:AT2G45000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtNUP62; EMBRYO DEFECTIVE 2766; nucleoporin 62; NUP62; T14P1.20
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    Genomic context

    See EMB2766 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Sequence:
    Chromosome: 2; NC_003071.7 (18564017..18567892)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene carotenoid cleavage dioxygenase 7 Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene PLAC8 family protein Neighboring gene tRNA-Arg Neighboring gene ncRNA

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    NM_180098.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables structural constituent of nuclear pore IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
     
    located_in cytosol HDA PubMed 
    located_in nuclear envelope IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nuclear periphery IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    structural constituent of nuclear pore
    NP_850429.1
    • EMBRYO DEFECTIVE 2766 (EMB2766); FUNCTIONS IN: structural constituent of nuclear pore; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, nuclear pore; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nsp1-like, C-terminal (InterPro:IPR007758); Has 235342 Blast hits to 95277 proteins in 3388 species: Archae - 819; Bacteria - 58190; Metazoa - 65863; Fungi - 46438; Plants - 10106; Viruses - 2707; Other Eukaryotes - 51219 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18564017..18567892
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_180098.3NP_850429.1  structural constituent of nuclear pore [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850429.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8L7F7, Q9SHD8
      UniProtKB/TrEMBL
      A0A178W0D6
      Conserved Domains (3) summary
      COG1390
      Location:543724
      NtpE; Archaeal/vacuolar-type H+-ATPase subunit E/Vma4 [Energy production and conversion]
      pfam04871
      Location:590727
      Uso1_p115_C; Uso1 / p115 like vesicle tethering protein, C terminal region
      pfam05064
      Location:519630
      Nsp1_C; Nsp1-like C-terminal region