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    GATA2 GATA transcription factor 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819112, updated on 18-Sep-2024

    Summary

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    Official Symbol
    GATA2
    Official Full Name
    GATA transcription factor 2
    Primary source
    TAIR:AT2G45050
    Locus tag
    AT2G45050
    See related
    Araport:AT2G45050
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    GATA transcription factor 2; T14P1.14
    Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors. A positive regulator of photomorphogenesis.
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    Genomic context

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    See GATA2 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (18582697..18584127)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Translation elongation factor EFG/EF2 protein Neighboring gene Matrixin family protein Neighboring gene alanine-tRNA ligase Neighboring gene Preprotein translocase Sec, Sec61-beta subunit protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Integration of light- and brassinosteroid-signaling pathways by a GATA transcription factor in Arabidopsis. Luo XM, et al. Dev Cell, 2010 Dec 14. PMID 21145502, Free PMC Article
    2. Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. Manfield IW, et al. Plant Physiol, 2007 Feb. PMID 17208962, Free PMC Article
    3. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_130069.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GATA transcription factor 2
    NP_182031.1
    • GATA transcription factor 2 (GATA2); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 4 (TAIR:AT3G60530.1); Has 1635 Blast hits to 1600 proteins in 197 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 636; Plants - 819; Viruses - 4; Other Eukaryotes - 67 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      18582697..18584127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130069.3 → NP_182031.1  GATA transcription factor 2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182031.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O49741
      UniProtKB/TrEMBL
      A0A178VTH4, A0A384L0T5, A0A654FCL4, B9DGF3
      Conserved Domains (1) summary
      smart00401
      Location:179 → 228
      ZnF_GATA; zinc finger binding to DNA consensus sequence [AT]GATA[AG]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O49741.1

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