U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    sks12 SKU5 similar 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842006, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    sks12
    Official Full Name
    SKU5 similar 12
    Primary source
    TAIR:AT1G55570
    Locus tag
    AT1G55570
    See related
    Araport:AT1G55570
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    SKU5 similar 12; SKU5 similar 12; T5A14.1; T5A14_1
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See sks12 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (20757767..20760268)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene SKU5 similar 14 Neighboring gene GRAS family transcription factor Neighboring gene RNI-like superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The miRNome function transitions from regulating developmental genes to transposable elements during pollen maturation. Oliver C, et al. Plant Cell, 2022 Feb 3. PMID 34755870, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_104433.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables copper ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pollen tube growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    SKU5 similar 12
    NP_175953.1
    • SKU5 similar 12 (sks12); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, type 2 (InterPro:IPR011706), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: SKU5 similar 11 (TAIR:AT3G13390.1); Has 5441 Blast hits to 5412 proteins in 1035 species: Archae - 18; Bacteria - 1816; Metazoa - 269; Fungi - 1918; Plants - 1254; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20757767..20760268
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104433.5 → NP_175953.1  SKU5 similar 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175953.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WGX2, A0A5S9WM50, Q9ZVV4
      Conserved Domains (4) summary
      PLN02354
      Location:2 → 554
      PLN02354; copper ion binding / oxidoreductase
      cd13846
      Location:31 → 146
      CuRO_1_AAO_like_1; The first cupredoxin domain of plant Ascorbate oxidase homologs
      cd13872
      Location:160 → 300
      CuRO_2_AAO_like_1; The second cupredoxin domain of plant pollen multicopper oxidase homologous to ascorbate oxidase
      cd13894
      Location:381 → 506
      CuRO_3_AAO_like_1; The third cupredoxin domain of plant Ascorbate oxidase homologs
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools