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    glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843054, updated on 18-Sep-2024

    Summary

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    Official Full Name
    glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
    Primary source
    TAIR:AT1G67330
    Locus tag
    AT1G67330
    See related
    Araport:AT1G67330
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F1N21.15
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Sequence:
    Chromosome: 1; NC_003070.9 (25213852..25215174)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene DNA primase, large subunit family Neighboring gene Ran BP2/NZF zinc finger-like superfamily protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene HCP-like superfamily protein with MYND-type zinc finger

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Two members of the DUF579 family are responsible for arabinogalactan methylation in Arabidopsis. Temple H, et al. Plant Direct, 2019 Feb. PMID 31245760, Free PMC Article
    2. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_105401.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables glucuronoxylan 4-O-methyltransferase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within plant-type cell wall modification IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within protein methylation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in xylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endosome HDA PubMed 
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  
    located_in trans-Golgi network HDA PubMed 

    General protein information

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    Preferred Names
    glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
    NP_176901.1
    • Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT1G27930.1); Has 252 Blast hits to 251 proteins in 20 species: Archae - 0; Bacteria - 5; Metazoa - 0; Fungi - 0; Plants - 240; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      25213852..25215174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105401.3 → NP_176901.1  glucuronoxylan 4-O-methyltransferase-like protein (DUF579) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_176901.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FYG0
      UniProtKB/TrEMBL
      A0A178W6D1, A0A5S9WQ68
      Conserved Domains (1) summary
      cl04661
      Location:70 → 291
      Polysacc_synt_4; Polysaccharide biosynthesis
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FYG0.1

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