U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    WRKY10 WRKY DNA-binding protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 842009, updated on 8-Oct-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    WRKY10
    Official Full Name
    WRKY DNA-binding protein 10
    Primary source
    TAIR:AT1G55600
    Locus tag
    AT1G55600
    See related
    Araport:AT1G55600
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATWRKY10; F20N2.3; MINI3; MINISEED 3; WRKY DNA-binding protein 10
    Summary
    member of WRKY Transcription Factor; Group I. It has WRKY domain at its N terminal end and zinc-finger like motif.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See WRKY10 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (20774046..20776294, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RNI-like superfamily protein Neighboring gene ncRNA Neighboring gene miscRNA Neighboring gene BRI1 like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. Luo M, et al. Proc Natl Acad Sci U S A, 2005 Nov 29. PMID 16293693, Free PMC Article
    2. Two imprinted genes primed by DEMETER in the central cell and activated by WRKY10 in the endosperm. Yang K, et al. J Genet Genomics, 2024 Aug. PMID 38599515
    3. The VQ motif protein IKU1 regulates endosperm growth and seed size in Arabidopsis. Wang A, et al. Plant J, 2010 Aug. PMID 20545893
    4. WRKY10 Regulates Seed Size through the miR397a-LAC2 Module in Arabidopsis thaliana. Guo W, et al. Genes (Basel), 2024 Aug 7. PMID 39202400, Free PMC Article
    5. A WRKY transcription factor recruits the SYG1-like protein SHB1 to activate gene expression and seed cavity enlargement. Kang X, et al. PLoS Genet, 2013. PMID 23505389, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. WRKY10 Regulates Seed Size through the miR397a-LAC2 Module in Arabidopsis thaliana.
      Title: WRKY10 Regulates Seed Size through the miR397a-LAC2 Module in Arabidopsis thaliana.
    2. Two imprinted genes primed by DEMETER in the central cell and activated by WRKY10 in the endosperm.
      Title: Two imprinted genes primed by DEMETER in the central cell and activated by WRKY10 in the endosperm.
    3. The recruitment of SHB1 by MINI3 to its own and IKU2 promoters represents a novel two-step amplification to counter the low expression level of IKU2, which is a trigger for endosperm proliferation and seed cavity enlargement
      Title: A WRKY transcription factor recruits the SYG1-like protein SHB1 to activate gene expression and seed cavity enlargement.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_104436.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within endosperm development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    WRKY DNA-binding protein 10
    NP_175956.1
    • WRKY DNA-binding protein 10 (WRKY10); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 34 (TAIR:AT4G26440.1); Has 14094 Blast hits to 8305 proteins in 616 species: Archae - 9; Bacteria - 1680; Metazoa - 3148; Fungi - 1347; Plants - 4061; Viruses - 262; Other Eukaryotes - 3587 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20774046..20776294 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104436.2 → NP_175956.1  WRKY DNA-binding protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175956.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q1PFK1, Q8VWQ3, Q9LG05
      UniProtKB/TrEMBL
      A0MEC9
      Conserved Domains (1) summary
      smart00774
      Location:306 → 363
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LG05.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools