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    ATDUF1 agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838627, updated on 18-Sep-2024

    Summary

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    Official Symbol
    ATDUF1
    Official Full Name
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1)
    Primary source
    TAIR:AT1G03300
    Locus tag
    AT1G03300
    See related
    Araport:AT1G03300
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DOMAIN OF UNKNOWN FUNCTION 724 1; DUF1; F15K9.10; F15K9_10
    Summary
    Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype
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    Genomic context

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    See ATDUF1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (811033..813086, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene CBS domain protein with a domain protein (DUF21) Neighboring gene Transcription factor TFIIE, alpha subunit Neighboring gene ELKS/Rab6-interacting/CAST family protein Neighboring gene debranching enzyme 1 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of DUF724 gene family in Arabidopsis thaliana. Cao X, et al. Plant Mol Biol, 2010 Jan. PMID 19795213
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AtDuf4 were found to express in the root tips. They were localized in nucleus.
      Title: Characterization of DUF724 gene family in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_100212.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1)
    NP_171829.1
    • DOMAIN OF UNKNOWN FUNCTION 724 1 (ATDUF1); FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 30 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 656 Blast hits to 530 proteins in 96 species: Archae - 2; Bacteria - 31; Metazoa - 151; Fungi - 36; Plants - 287; Viruses - 0; Other Eukaryotes - 149 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      811033..813086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100212.1 → NP_171829.1  agenet domain protein (DOMAIN OF UNKNOWN FUNCTION 724 1) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_171829.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVT1
      UniProtKB/TrEMBL
      A0A654E6D5
      Conserved Domains (3) summary
      smart00743
      Location:223 → 279
      Agenet; Tudor-like domain present in plant sequences
      pfam05266
      Location:484 → 669
      DUF724; Protein of unknown function (DUF724)
      pfam05641
      Location:6 → 71
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVT1.1

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