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    NF-YC3 nuclear factor Y, subunit C3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841922, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YC3
    Official Full Name
    nuclear factor Y, subunit C3
    Primary source
    TAIR:AT1G54830
    Locus tag
    AT1G54830
    See related
    Araport:AT1G54830
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; F14C21.41; F14C21_41; nuclear factor Y; subunit C3; subunit C3''
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    Genomic context

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    See NF-YC3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (20451083..20452671)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GDSL-like Lipase/Acylhydrolase superfamily protein Neighboring gene ncRNA Neighboring gene Protein kinase superfamily protein Neighboring gene ncRNA Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene HSP20-like chaperones superfamily protein Neighboring gene Glycoprotein membrane precursor GPI-anchored

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. CONSTANS Imparts DNA Sequence Specificity to the Histone Fold NF-YB/NF-YC Dimer. Gnesutta N, et al. Plant Cell, 2017 Jun. PMID 28526714, Free PMC Article
    2. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Tang Y, et al. Mol Plant, 2017 Feb 13. PMID 27876642
    3. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Liu X, et al. Nat Commun, 2016 Sep 14. PMID 27624486, Free PMC Article
    4. Nuclear factor Y-mediated H3K27me3 demethylation of the SOC1 locus orchestrates flowering responses of Arabidopsis. Hou X, et al. Nat Commun, 2014 Aug 8. PMID 25105952
    5. CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. Wenkel S, et al. Plant Cell, 2006 Nov. PMID 17138697, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_104356.3
    NM_179477.2
    NM_202301.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transcription cis-regulatory region binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coregulator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within abscisic acid-activated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gibberellic acid mediated signaling pathway IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within long-day photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within regulation of seed germination IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    NOT located_in cytosol RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit C3
    NP_175880.1
    • ''nuclear factor Y, subunit C3'' (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1367 Blast hits to 1367 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 368; Plants - 431; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
    NP_849808.1
    • ''nuclear factor Y, subunit C3'' (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 1369 Blast hits to 1369 proteins in 230 species: Archae - 0; Bacteria - 0; Metazoa - 451; Fungi - 370; Plants - 431; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).
    NP_974030.1
    • ''nuclear factor Y, subunit C3'' (NF-YC3); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit C9 (TAIR:AT1G08970.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20451083..20452671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104356.3 → NP_175880.1  nuclear factor Y, subunit C3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175880.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVL3
      UniProtKB/TrEMBL
      A0A178WGU5, A0A5S9WMD1
      Conserved Domains (1) summary
      COG5208
      Location:52 → 199
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    2. NM_202301.2 → NP_974030.1  nuclear factor Y, subunit C3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974030.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVL3
      UniProtKB/TrEMBL
      A0A178WGU5, A0A5S9WMD1
      Conserved Domains (1) summary
      COG5208
      Location:52 → 199
      HAP5; CCAAT-binding factor, subunit C [Transcription]

    3. NM_179477.2 → NP_849808.1  nuclear factor Y, subunit C3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849808.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVL3
      UniProtKB/TrEMBL
      A0A178WGU5, A0A5S9WMD1
      Conserved Domains (1) summary
      COG5208
      Location:52 → 199
      HAP5; CCAAT-binding factor, subunit C [Transcription]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVL3.1

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