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    agenet domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837453, updated on 14-Nov-2024

    Summary

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    Official Full Name
    agenet domain-containing protein
    Primary source
    TAIR:AT1G09320
    Locus tag
    AT1G09320
    See related
    Araport:AT1G09320
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T31J12.4; T31J12_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (3009890..3012407, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene importin alpha isoform 4 Neighboring gene rhodanese-like domain protein Neighboring gene uncharacterized protein Neighboring gene Metallopeptidase M24 family protein Neighboring gene plant/protein (Protein of unknown function, DUF538) Neighboring gene golgi apparatus membrane protein-like protein ECHIDNA protein Neighboring gene chloroplast RNA binding protein Neighboring gene galactinol synthase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plant HP1 protein ADCP1 links multivalent H3K9 methylation readout to heterochromatin formation. Zhao S, et al. Cell Res, 2019 Jan. PMID 30425322, Free PMC Article
    2. Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin. Zhang C, et al. Nat Commun, 2018 Oct 31. PMID 30382101, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_100802.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables histone reader activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables methylated histone binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA methylation-dependent constitutive heterochromatin formation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chromosome, centromeric region IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in heterochromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    agenet domain-containing protein
    NP_172403.3
    • agenet domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein (TAIR:AT3G06520.1); Has 769 Blast hits to 316 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 3; Plants - 733; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3009890..3012407 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100802.5 → NP_172403.3  agenet domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_172403.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q500V5, Q67YH5, Q9ZPZ3
      UniProtKB/TrEMBL
      A0A654E8B8
      Conserved Domains (2) summary
      smart00743
      Location:118 → 173
      Agenet; Tudor-like domain present in plant sequences
      pfam05641
      Location:224 → 284
      Agenet; Agenet domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q500V5.1

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