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    Alba DNA/RNA-binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843932, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Alba DNA/RNA-binding protein
    Primary source
    TAIR:AT1G76010
    Locus tag
    AT1G76010
    See related
    Araport:AT1G76010
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T4O12.22; T4O12_22
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (28528059..28531771, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Single hybrid motif superfamily protein Neighboring gene PAM domain (PCI/PINT associated module) protein Neighboring gene tRNA-Asp Neighboring gene Thioredoxin superfamily protein Neighboring gene ATPase, V1 complex, subunit B protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis. Yuan W, et al. Sci Adv, 2019 May. PMID 31106272, Free PMC Article
    2. ALBA proteins confer thermotolerance through stabilizing HSF messenger RNAs in cytoplasmic granules. Tong J, et al. Nat Plants, 2022 Jul. PMID 35817823
    3. Organizer-Derived WOX5 Signal Maintains Root Columella Stem Cells through Chromatin-Mediated Repression of CDF4 Expression. Pi L, et al. Dev Cell, 2015 Jun 8. PMID 26028217
    4. In Planta Determination of the mRNA-Binding Proteome of Arabidopsis Etiolated Seedlings. Reichel M, et al. Plant Cell, 2016 Oct. PMID 27729395, Free PMC Article
    5. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. the AtALBA1 and AtALBA2 protein complex is the genic R-loop reader crucial for genome stability in Arabidopsis [ALBA1]
      Title: ALBA protein complex reads genic R-loops to maintain genome stability in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001334704.1
    NM_106249.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding HDA PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    Alba DNA/RNA-binding protein
    NP_001319386.1
    • Alba DNA/RNA-binding protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alba, DNA/RNA-binding protein (InterPro:IPR002775); BEST Arabidopsis thaliana protein match is: Alba DNA/RNA-binding protein (TAIR:AT1G20220.1); Has 82924 Blast hits to 30623 proteins in 1819 species: Archae - 80; Bacteria - 18988; Metazoa - 40987; Fungi - 4955; Plants - 6789; Viruses - 861; Other Eukaryotes - 10264 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      28528059..28531771 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334704.1 → NP_001319386.1  Alba DNA/RNA-binding protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMY0, A0A654EPD5, Q93VA8
      Conserved Domains (1) summary
      pfam01918
      Location:19 → 83
      Alba

    2. NM_106249.4 → NP_565124.1  Alba DNA/RNA-binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565124.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WMY0, A0A654EPD5, Q93VA8
      Conserved Domains (1) summary
      pfam01918
      Location:19 → 83
      Alba
    Nucleotide Protein
    Heading Accession and Version

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