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    nuclear receptor coactivator [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843571, updated on 18-Sep-2024

    Summary

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    Official Full Name
    nuclear receptor coactivator
    Primary source
    TAIR:AT1G72390
    Locus tag
    AT1G72390
    See related
    Araport:AT1G72390
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    PHL; PHYTOCHROME-DEPENDENT LATE-FLOWERING; T10D10.14; T10D10_14
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (27245082..27251672)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor family protein Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene 40s ribosomal protein SA Neighboring gene COP1-interacting protein-like protein Neighboring gene Chaperone DnaJ-domain superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light-dependent destabilization of PHL in Arabidopsis. Endo M, et al. Plant Signal Behav, 2014. PMID 24614229, Free PMC Article
    2. PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS. Endo M, et al. Proc Natl Acad Sci U S A, 2013 Oct 29. PMID 24127609, Free PMC Article
    3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. destabilized by light exposure
      Title: Light-dependent destabilization of PHL in Arabidopsis.
    2. PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS. [PHL]
      Title: PHYTOCHROME-DEPENDENT LATE-FLOWERING accelerates flowering through physical interactions with phytochrome B and CONSTANS.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    • At1g72390_Arabidopsis_lyrata_ssp._lyrata_CAN1 (e-PCR)
    • At1g72390_Arabidopsis_lyrata_ssp._petraea_GER1 (e-PCR)
    NM_001334526.1
    NM_105898.7

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in circadian rhythm IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    involved_in long-day photoperiodism, flowering IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in regulation of timing of transition from vegetative to reproductive phase IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in response to light stimulus IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SAGA complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear receptor coactivator
    NP_177383.5
    • CONTAINS InterPro DOMAIN/s: Spt20 family (InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198; Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes - 1797 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27245082..27251672
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_105898.7 → NP_177383.5  nuclear receptor coactivator [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177383.5

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDB2, Q9C9D6, Q9C9D7
      UniProtKB/TrEMBL
      A0A178WED1, A0A654ETG6
      Conserved Domains (1) summary
      pfam12090
      Location:62 → 202
      Spt20; Spt20 family

    2. NM_001334526.1 → NP_001321648.1  nuclear receptor coactivator [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IDB2, Q9C9D6, Q9C9D7
      UniProtKB/TrEMBL
      A0A178WED1, A0A654ETG6
      Conserved Domains (1) summary
      pfam12090
      Location:62 → 202
      Spt20; Spt20 family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IDB2.1

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