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    SS3 strictosidine synthase 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843738, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SS3
    Official Full Name
    strictosidine synthase 3
    Primary source
    TAIR:AT1G74000
    Locus tag
    AT1G74000
    See related
    Araport:AT1G74000
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSS-3 STRICTOSIDINE SYNTHASE; F2P9.13; F2P9_13; strictosidine synthase 3
    Summary
    encodes a protein similar to strictosidine synthase, which is involved in the production of monoterpene indole alkaloids. This gene belongs to a family of 13 members in Arabidopsis.
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    Genomic context

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    See SS3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (27829051..27831536, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene obscurin-like protein Neighboring gene Phosphoribulokinase / Uridine kinase family Neighboring gene signal peptide peptidase Neighboring gene Calcium-dependent phosphotriesterase superfamily protein Neighboring gene strictosidine synthase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Animal and plant members of a gene family with similarity to alkaloid-synthesizing enzymes. Fabbri M, et al. Biochem Biophys Res Commun, 2000 Apr 29. PMID 10777701
    2. Phylogenetic and transcriptional analysis of a strictosidine synthase-like gene family in Arabidopsis thaliana reveals involvement in plant defence responses. Sohani MM, et al. Plant Biol (Stuttg), 2009 Jan. PMID 19121120
    3. Proteomics of loosely bound cell wall proteins of Arabidopsis thaliana cell suspension cultures: a critical analysis. Borderies G, et al. Electrophoresis, 2003 Oct. PMID 14595688
    4. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106059.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables strictosidine synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    NOT enables strictosidine synthase activity TAS
    Traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    strictosidine synthase 3
    NP_177540.3
    • strictosidine synthase 3 (SS3); FUNCTIONS IN: strictosidine synthase activity; INVOLVED IN: biosynthetic process; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Strictosidine synthase, conserved region (InterPro:IPR018119), Strictosidine synthase (InterPro:IPR004141), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: strictosidine synthase 2 (TAIR:AT1G74020.1); Has 923 Blast hits to 912 proteins in 181 species: Archae - 1; Bacteria - 172; Metazoa - 217; Fungi - 0; Plants - 448; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27829051..27831536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106059.5 → NP_177540.3  strictosidine synthase 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177540.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P92976, Q0WLG6, Q9C9C1
      UniProtKB/TrEMBL
      A0A178VZY7, A0A654EQ99, A0A7G2E8R4
      Conserved Domains (2) summary
      COG3386
      Location:46 → 295
      YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
      cl22863
      Location:148 → 236
      Str_synth; Strictosidine synthase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P92976.2

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