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    TRZ3 tRNAse Z3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841647, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRZ3
    Official Full Name
    tRNAse Z3
    Primary source
    TAIR:AT1G52160
    Locus tag
    AT1G52160
    See related
    Araport:AT1G52160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9I5.1; F9I5_1; tRNAse Z3
    Summary
    Encodes a tRNase Z.
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    Genomic context

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    See TRZ3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Sequence:
    Chromosome: 1; NC_003070.9 (19420715..19424474, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein Neighboring gene uncharacterized protein Neighboring gene tRNA-Asn Neighboring gene Aquaporin-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis encodes four tRNase Z enzymes. Canino G, et al. Plant Physiol, 2009 Jul. PMID 19411372, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_104097.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 3'-tRNA processing endoribonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA 3'-end processing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    tRNAse Z3
    NP_175628.2
    • tRNAse Z3 (TRZ3); BEST Arabidopsis thaliana protein match is: tRNAse Z4 (TAIR:AT3G16260.1); Has 6463 Blast hits to 4305 proteins in 1644 species: Archae - 441; Bacteria - 4471; Metazoa - 273; Fungi - 252; Plants - 107; Viruses - 0; Other Eukaryotes - 919 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      19420715..19424474 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_104097.6 → NP_175628.2  tRNAse Z3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_175628.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8H140, Q8VYS2, Q9M819
      UniProtKB/TrEMBL
      A0A178W0M3
      Conserved Domains (4) summary
      cd07718
      Location:540 → 784
      RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
      pfam13691
      Location:105 → 161
      Lactamase_B_4; tRNase Z endonuclease
      cl00716
      Location:211 → 310
      tRNA_deacylase; D-aminoacyl-tRNA deacylase
      cl23716
      Location:757 → 825
      metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8VYS2.1

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