U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    binding protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819852, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    binding protein
    Primary source
    TAIR:AT3G06670
    Locus tag
    AT3G06670
    See related
    Araport:AT3G06670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 3
    Exon count:
    25
    Sequence:
    Chromosome: 3; NC_003074.8 (2105399..2113698, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene PAPA-1-like family protein / zinc finger (HIT type) family protein Neighboring gene tRNA-His Neighboring gene Ribosomal L29e protein family Neighboring gene putative acyl-coenzyme A oxidase

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Protein Phosphatase 4 and SMEK1 Complex Dephosphorylates HYL1 to Promote miRNA Biogenesis by Antagonizing the MAPK Cascade in Arabidopsis. Su C, et al. Dev Cell, 2017 Jun 5. PMID 28586645
    2. PLATINUM SENSITIVE 2 LIKE impacts growth, root morphology, seed set, and stress responses. Kataya ARA, et al. PLoS One, 2017. PMID 28678890, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help
    NM_001202902.1
    NM_111547.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables primary miRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulatory ncRNA processing IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    colocalizes_with nuclear body IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of protein phosphatase 4 complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    binding protein
    NP_001189831.1
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1).
    NP_187323.2
    • binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF625 (InterPro:IPR006887); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G49390.1); Has 3148 Blast hits to 2569 proteins in 332 species: Archae - 0; Bacteria - 112; Metazoa - 1464; Fungi - 567; Plants - 205; Viruses - 18; Other Eukaryotes - 782 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2105399..2113698 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111547.5 → NP_187323.2  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187323.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X9U5, Q8LPS4
      Conserved Domains (1) summary
      pfam04802
      Location:167 → 356
      SMK-1; Component of IIS longevity pathway SMK-1

    2. NM_001202902.1 → NP_001189831.1  binding protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189831.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9X9U5, F4JC31
      Conserved Domains (1) summary
      pfam04802
      Location:167 → 377
      SMK-1; Component of IIS longevity pathway SMK-1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools