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    APO4 APO RNA-binding protein (DUF794) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821728, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APO4
    Official Full Name
    APO RNA-binding protein (DUF794)
    Primary source
    TAIR:AT3G21740
    Locus tag
    AT3G21740
    See related
    Araport:AT3G21740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ACCUMULATION OF PHOTOSYSTEM ONE 4
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    Genomic context

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    See APO4 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (7662186..7664098, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene isocitrate lyase Neighboring gene Dihydroneopterin aldolase Neighboring gene UDP-glucosyl transferase 71B1 Neighboring gene ncRNA Neighboring gene UDP-Glycosyltransferase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_113069.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    APO RNA-binding protein (DUF794)
    NP_188811.2
    • ACCUMULATION OF PHOTOSYSTEM ONE 4 (APO4); INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF794, plant (InterPro:IPR008512); BEST Arabidopsis thaliana protein match is: Arabidopsis thaliana protein of unknown function (DUF794) (TAIR:AT5G57930.2); Has 163 Blast hits to 121 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 163; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7662186..7664098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113069.3 → NP_188811.2  APO RNA-binding protein (DUF794) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188811.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8GYN3, Q9LSZ0
      UniProtKB/TrEMBL
      A0A178VKA4, Q1EC50
      Conserved Domains (2) summary
      PLN00111
      Location:1 → 322
      PLN00111; accumulation of photosystem one; Provisional
      pfam05634
      Location:33 → 172
      APO_RNA-bind; APO RNA-binding
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSZ0.2

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