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    SK9 SKP1-like 9 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821739, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SK9
    Official Full Name
    SKP1-like 9
    Primary source
    TAIR:AT3G21850
    Locus tag
    AT3G21850
    See related
    Araport:AT3G21850
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ASK9; SKP1-like 9
    Summary
    one of Arabidopsis SKP1 homologues
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    Genomic context

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    See SK9 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Sequence:
    Chromosome: 3; NC_003074.8 (7697033..7697616, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene SKP1-like 7 Neighboring gene SKP1-like 10 Neighboring gene peroxin 22

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Arabidopsis SKP1-LIKE1 gene is essential for male meiosis and may control homologue separation. Yang M, et al. Proc Natl Acad Sci U S A, 1999 Sep 28. PMID 10500191, Free PMC Article
    2. The SKP1-like gene family of Arabidopsis exhibits a high degree of differential gene expression and gene product interaction during development. Dezfulian MH, et al. PLoS One, 2012. PMID 23226441, Free PMC Article
    3. An F-box gene, CPR30, functions as a negative regulator of the defense response in Arabidopsis. Gou M, et al. Plant J, 2009 Dec. PMID 19682297
    4. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction. Marrocco K, et al. Plant J, 2006 Feb. PMID 16412087
    5. Expression and interaction analysis of Arabidopsis Skp1-related genes. Takahashi N, et al. Plant Cell Physiol, 2004 Jan. PMID 14749489

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_113080.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of mitotic cell cycle TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    SKP1-like 9
    NP_566694.1
    • SKP1-like 9 (SK9); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 10 (TAIR:AT3G21860.1); Has 1438 Blast hits to 1434 proteins in 267 species: Archae - 0; Bacteria - 0; Metazoa - 551; Fungi - 178; Plants - 536; Viruses - 11; Other Eukaryotes - 162 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      7697033..7697616 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113080.2 → NP_566694.1  SKP1-like 9 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566694.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0MEX6, Q9LSX9
      UniProtKB/TrEMBL
      A0A5S9XEL5, A0A654F9I8
      Conserved Domains (2) summary
      cd18322
      Location:5 → 118
      BTB_POZ_SKP1; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in S-phase kinase-associated protein 1 (SKP1) and similar proteins
      pfam01466
      Location:104 → 151
      Skp1; Skp1 family, dimerization domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LSX9.1

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