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    WEB family protein (DUF827) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820509, updated on 18-Sep-2024

    Summary

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    Official Full Name
    WEB family protein (DUF827)
    Primary source
    TAIR:AT3G13190
    Locus tag
    AT3G13190
    See related
    Araport:AT3G13190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Sequence:
    Chromosome: 3; NC_003074.8 (4240139..4242008)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein Neighboring gene Cwf15 / Cwc15 cell cycle control family protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084674.1
    NM_001338036.1
    NM_112159.3
    NM_202572.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    WEB family protein (DUF827)
    NP_001319537.1
    • Plant protein of unknown function (DUF827); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 29991 Blast hits to 19596 proteins in 1702 species: Archae - 469; Bacteria - 4655; Metazoa - 14295; Fungi - 2209; Plants - 1912; Viruses - 102; Other Eukaryotes - 6349 (source: NCBI BLink).
    NP_187925.1
    • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 29991 Blast hits to 19596 proteins in 1702 species: Archae - 469; Bacteria - 4655; Metazoa - 14295; Fungi - 2209; Plants - 1912; Viruses - 102; Other Eukaryotes - 6349 (source: NCBI BLink).
    NP_974301.1
    • Plant protein of unknown function (DUF827); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT5G55860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4240139..4242008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338036.1 → NP_001319537.1  WEB family protein (DUF827) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK53
      UniProtKB/TrEMBL
      A0A178VAA6, A0A5S9XBN4
      Conserved Domains (1) summary
      COG1196
      Location:42 → 305
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. NM_202572.2 → NP_974301.1  WEB family protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974301.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK53
      UniProtKB/TrEMBL
      A0A178VAA6, A0A5S9XBN4
      Conserved Domains (1) summary
      COG1196
      Location:42 → 305
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. NM_112159.3 → NP_187925.1  WEB family protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187925.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK53
      UniProtKB/TrEMBL
      A0A178VAA6, A0A5S9XBN4
      Conserved Domains (1) summary
      COG1196
      Location:42 → 305
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    4. NM_001084674.1 → NP_001078143.1  WEB family protein (DUF827) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078143.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LK53
      UniProtKB/TrEMBL
      A0A178VAA6, A0A5S9XBN4
      Conserved Domains (1) summary
      COG1196
      Location:42 → 305
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LK53.1

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