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    TEL1 terminal EAR1-like 1 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822211, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TEL1
    Official Full Name
    terminal EAR1-like 1
    Primary source
    TAIR:AT3G26120
    Locus tag
    AT3G26120
    See related
    Araport:AT3G26120
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    terminal EAR1-like 1
    Summary
    Similar to terminal ear1 in Zea mays. A member of mei2-like gene family; phylogenetic analysis revealed that TEL1 belongs to the third clade of mei2-like proteins (TEL clade), with conserved two N-terminal RNA recognition motifs (RRM), in addition to the C-terminal RRM, shared among all mei2-like proteins.
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    Genomic context

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    See TEL1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Sequence:
    Chromosome: 3; NC_003074.8 (9546259..9549453)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Anther-specific protein agp1-like protein Neighboring gene Pyridoxal-5'-phosphate-dependent enzyme family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Cellulase (glycosyl hydrolase family 5) protein Neighboring gene cytochrome P450, family 86, subfamily C, polypeptide 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    terminal EAR1-like 1
    NP_189242.1
    • terminal EAR1-like 1 (TEL1); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: primary root apical meristem, cotyledon primordium, shoot apical meristem, floral meristem, embryonic shoot apical meristem; EXPRESSED DURING: D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), RNA recognition motif 2 (InterPro:IPR007201), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: terminal EAR1-like 2 (TAIR:AT1G67770.1); Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9546259..9549453
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113518.3 → NP_189242.1  terminal EAR1-like 1 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_189242.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FG60, F4JBE2
      Conserved Domains (4) summary
      COG0724
      Location:214 → 332
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12275
      Location:105 → 174
      RRM1_MEI2_EAR1_like; RNA recognition motif 1 in Mei2-like proteins and terminal EAR1-like proteins
      cd12527
      Location:212 → 282
      RRM2_EAR1_like; RNA recognition motif 2 in terminal EAR1-like proteins
      cd12530
      Location:407 → 514
      RRM3_EAR1_like; RNA recognition motif 3 in terminal EAR1-like proteins
    Nucleotide Protein
    Heading Accession and Version

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