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    TIF3C2 eukaryotic translation initiation factor 3 subunit C2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 821858, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TIF3C2
    Official Full Name
    eukaryotic translation initiation factor 3 subunit C2
    Primary source
    TAIR:AT3G22860
    Locus tag
    AT3G22860
    See related
    Araport:AT3G22860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATEIF3C-2; ATTIF3C2; EIF3C-2; EUKARYOTIC INITIATION FACTOR 3C-2; eukaryotic translation initiation factor 3 subunit C2
    Summary
    member of eIF3c - eukaryotic initiation factor 3c
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    Genomic context

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    See TIF3C2 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (8090654..8093248, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Chlorophyll A-B binding family protein Neighboring gene emp24/gp25L/p24 family/GOLD family protein Neighboring gene aluminum induced protein with YGL and LRDR motifs Neighboring gene F-box and associated interaction domains-containing protein Neighboring gene DNA repair (Rad51) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables translation initiation factor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 3 subunit C2
    NP_188926.4
    • eukaryotic translation initiation factor 3 subunit C2 (TIF3C2); FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: eukaryotic translation initiation factor 3 complex; EXPRESSED IN: sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Proteasome component (PCI) domain (InterPro:IPR000717), Eukaryotic translation initiation factor 3 subunit 8, N-terminal (InterPro:IPR008905); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3C (TAIR:AT3G56150.2); Has 741 Blast hits to 579 proteins in 226 species: Archae - 0; Bacteria - 13; Metazoa - 330; Fungi - 160; Plants - 74; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      8090654..8093248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113186.4 → NP_188926.4  eukaryotic translation initiation factor 3 subunit C2 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188926.4

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FF60, F4J1N5, Q9LIL2
      Conserved Domains (2) summary
      smart00088
      Location:663 → 752
      PINT; motif in proteasome subunits, Int-6, Nip-1 and TRIP-15
      pfam05470
      Location:32 → 593
      eIF-3c_N; Eukaryotic translation initiation factor 3 subunit 8 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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