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    RHM3 rhamnose biosynthesis 3 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820707, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RHM3
    Official Full Name
    rhamnose biosynthesis 3
    Primary source
    TAIR:AT3G14790
    Locus tag
    AT3G14790
    See related
    Araport:AT3G14790
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3; ATRHM3; rhamnose biosynthesis 3
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    Genomic context

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    See RHM3 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Sequence:
    Chromosome: 3; NC_003074.8 (4964105..4967075)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene callose synthase Neighboring gene pseudo Neighboring gene mechanosensitive channel of small conductance-like 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sugar interconversions and cell wall biosynthesis: how to bring the inside to the outside. Seifert GJ. Curr Opin Plant Biol, 2004 Jun. PMID 15134748
    2. Functional analysis of Arabidopsis thaliana RHM2/MUM4, a multidomain protein involved in UDP-D-glucose to UDP-L-rhamnose conversion. Oka T, et al. J Biol Chem, 2007 Feb 23. PMID 17190829
    3. Tandem affinity purification and mass spectrometric analysis of ubiquitylated proteins in Arabidopsis. Saracco SA, et al. Plant J, 2009 Jul. PMID 19292762, Free PMC Article
    4. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    5. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112340.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables UDP-L-rhamnose synthase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables UDP-L-rhamnose synthase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables UDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables dTDP-glucose 4,6-dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within UDP-rhamnose biosynthetic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in nucleotide-sugar metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytosol HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    rhamnose biosynthesis 3
    NP_188097.1
    • rhamnose biosynthesis 3 (RHM3); CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); BEST Arabidopsis thaliana protein match is: NAD-dependent epimerase/dehydratase family protein (TAIR:AT1G53500.1); Has 53605 Blast hits to 53390 proteins in 3033 species: Archae - 947; Bacteria - 30692; Metazoa - 1095; Fungi - 569; Plants - 1514; Viruses - 102; Other Eukaryotes - 18686 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4964105..4967075
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001338136.1 → NP_001326092.1  rhamnose biosynthesis 3 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1I9LN83, A0A5S9XDL2

    2. NM_112340.4 → NP_188097.1  rhamnose biosynthesis 3 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_188097.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9LH76
      UniProtKB/TrEMBL
      A0A178VEJ5, A0A5S9XDL2
      Conserved Domains (1) summary
      PLN02260
      Location:1 → 664
      PLN02260; probable rhamnose biosynthetic enzyme
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LH76.1

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