Lhca6 PSI type II chlorophyll a/b-binding protein (Lhca2*1) [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: Lhca6
Official Full Name: PSI type II chlorophyll a/b-binding protein (Lhca2*1)
Primary source: TAIR:AT1G19150
Locus tag: AT1G19150
See related: Araport:AT1G19150
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: LHCA2*1; photosystem I light harvesting complex gene 6; PSI TYPE II CHLOROPHYLL A/B-BINDING PROTEIN; T29M8.2; T29M8_2
Summary: PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA
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Genomic context

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See Lhca6 in Genome Data Viewer

Location:: chromosome: 1

Exon count:: 3

Sequence:: Chromosome: 1; NC_003070.9 (6612630..6613972)

Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

The stromal loop of Lhca6 is likely to be necessary for the interaction with chloroplast NADH dehydrogenase, rather than for the association with the photosystenm I supercomplex.
Title: Stromal Loop of Lhca6 is Responsible for the Linker Function Required for the NDH-PSI Supercomplex Formation.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_101773.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in photosynthesis, light harvesting in photosystem I	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	HDA more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: PSI type II chlorophyll a/b-binding protein (Lhca2*1)

NP_173349.1

photosystem I light harvesting complex gene 6 (LHCA6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2345 Blast hits to 2241 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1989; Viruses - 0; Other Eukaryotes - 353 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003070.9 Reference assembly

Range

6612630..6613972

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_101773.3 → NP_173349.1 PSI type II chlorophyll a/b-binding protein (Lhca2*1) [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_173349.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q43382, Q84WT1, Q8LCQ4, Q9LMB1

UniProtKB/TrEMBL

A0A178WEZ5, A0A5S9V4V4, A0A654EG66

Conserved Domains (1) summary

PLN00098
Location:1 → 270

PLN00098; light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional